Explore projects

DiVA (DNA Variant Analysis) is a pipeline for Next-Generation Sequencing Exome data anlysis

Subset of publicly available genomic data from the Genome Sequence Archive of the Beijing Institute of Genomics, accessible with the accession ID PRJCA000091.

Docker image of PBEST, used to screen COVID-19 samples via group testing, as described in the manuscript "Efficient high throughput SARS-CoV-2 testing to detect asymptomatic carriers", by Shental et al.

Snakemake enabled pipeline for coverage estimation with GATK DepthOfCoverage

A complete Laboratory Information Management System for Next Generation Sequencing Laboratories

Snakemake pipeline to map DNA datasets to a given reference genome using BWA MEM and Samtools.

DNA Reference Creator: this pipeline is aimed at downloading and building indexes and accessory files for reference genomes

pipeline for Next-Generation Sequencing Whole Genome data analysis.

Non Invasive Analysis of Somatic Mutations in Cancer

MUSTA: a modular pipeline to detect, classify and interpret mutations in cancer

SOLIDA is command-line solution that facilitate the reproducibility and portability of NGS pipelines. It can easily organize the deployment, the data management and the execution of a Snakemake based workflow.

Container Docker application that facilitate the solida usage, via a friendly GUI

Tool to notify updates in genetic variant annotations.

Reliable foundation library to access infrastructure elements for next generation sequencing data analysis and management

A novel affordable and reliable framework for accurate detection and comprehensive analysis of somatic mutations in cancer

MUSTA: a modular pipeline to detect, classify and interpret mutations in cancer

Snakemake enabled pipeline for smallRNA-Seq identification

mapping and variant calling following GATK Best Practices for Germline Variant Discovery.

solida-core documentation: