Explore projects

Docker image of PBEST, used to screen COVID-19 samples via group testing, as described in the manuscript "Efficient high throughput SARS-CoV-2 testing to detect asymptomatic carriers", by Shental et al.

Tool to notify updates in genetic variant annotations.

A novel affordable and reliable framework for accurate detection and comprehensive analysis of somatic mutations in cancer

Reliable foundation library to access infrastructure elements for next generation sequencing data analysis and management

pipeline for Next-Generation Sequencing Whole Genome data analysis.

A complete Laboratory Information Management System for Next Generation Sequencing Laboratories

Container Docker application that facilitate the solida usage, via a friendly GUI

SOLIDA is command-line solution that facilitate the reproducibility and portability of NGS pipelines. It can easily organize the deployment, the data management and the execution of a Snakemake based workflow.

MUSTA: a modular pipeline to detect, classify and interpret mutations in cancer

Non Invasive Analysis of Somatic Mutations in Cancer

DNA Reference Creator: this pipeline is aimed at downloading and building indexes and accessory files for reference genomes

Snakemake pipeline to map DNA datasets to a given reference genome using BWA MEM and Samtools.

Subset of publicly available genomic data from the Genome Sequence Archive of the Beijing Institute of Genomics, accessible with the accession ID PRJCA000091.

MUSTA: a modular pipeline to detect, classify and interpret mutations in cancer

A repository with test data for DNA analysis pipelines

Beacon v2.x

A pipeline for QC