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MUSTA: a modular pipeline to detect, classify and interpret mutations in cancer

Non Invasive Analysis of Somatic Mutations in Cancer

pipeline for Next-Generation Sequencing Whole Genome data analysis.

Snakemake pipeline to map DNA datasets to a given reference genome using BWA MEM and Samtools.

DiVA (DNA Variant Analysis) is a pipeline for Next-Generation Sequencing Exome data anlysis

UMI-Based Preprocessing Pipeline

Tool to notify updates in genetic variant annotations.

A repository with test data for DNA analysis pipelines

miRNA analysis pipeline

A pipeline for QC

A complete Laboratory Information Management System for Next Generation Sequencing Laboratories

Snakemake enabled pipeline for coverage estimation with GATK DepthOfCoverage

Tool to notify updates in genetic variant annotations.

Python client for VCF-Miner

Container Docker application that facilitate the solida usage, via a friendly GUI

Estimation of tumor fraction in cell-free DNA (cfDNA).