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A pipeline for QC

a bunch of useful functions and classes

Estimation of tumor fraction in cell-free DNA (cfDNA).

Reliable foundation library to access infrastructure elements for next generation sequencing data analysis and management

Snakemake enabled pipeline for coverage estimation with GATK DepthOfCoverage

MUSTA: end-to-end pipeline to detect, classify and interpret mutations in cancer

Docker image of PBEST, used to screen COVID-19 samples via group testing, as described in the manuscript "Efficient high throughput SARS-CoV-2 testing to detect asymptomatic carriers", by Shental et al.

SOLIDA is command-line solution that facilitate the reproducibility and portability of NGS pipelines. It can easily organize the deployment, the data management and the execution of a Snakemake based workflow.

DiVA (DNA Variant Analysis) is a pipeline for Next-Generation Sequencing Exome data anlysis

Genomic Hotspot Analysis Pipeline