Explore projects

DNA Reference Creator: this pipeline is aimed at downloading and building indexes and accessory files for reference genomes

a pipeline for RNA-seq data analysis.

Snakemake enabled pipeline for smallRNA-Seq identification

mapping and variant calling following GATK Best Practices for Germline Variant Discovery.

SOLIDA is command-line solution that facilitate the reproducibility and portability of NGS pipelines. It can easily organize the deployment, the data management and the execution of a Snakemake based workflow.

Subset of publicly available genomic data from the Genome Sequence Archive of the Beijing Institute of Genomics, accessible with the accession ID PRJCA000091.

Docker image of PBEST, used to screen COVID-19 samples via group testing, as described in the manuscript "Efficient high throughput SARS-CoV-2 testing to detect asymptomatic carriers", by Shental et al.

MUSTA: a modular pipeline to detect, classify and interpret mutations in cancer