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pipeline for Next-Generation Sequencing Whole Genome data analysis.

DiVA (DNA Variant Analysis) is a pipeline for Next-Generation Sequencing Exome data anlysis

Snakemake pipeline to map DNA datasets to a given reference genome using BWA MEM and Samtools.

mapping and variant calling following GATK Best Practices for Germline Variant Discovery.

Snakemake enabled pipeline for smallRNA-Seq identification

a pipeline for RNA-seq data analysis.

A pipeline for QC

DNA Reference Creator: this pipeline is aimed at downloading and building indexes and accessory files for reference genomes

A repository with test data for DNA analysis pipelines

Non Invasive Analysis of Somatic Mutations in Cancer

Container Docker application that facilitate the solida usage, via a friendly GUI

Python client for VCF-Miner

Tool to notify updates in genetic variant annotations.

Docker image of PBEST, used to screen COVID-19 samples via group testing, as described in the manuscript "Efficient high throughput SARS-CoV-2 testing to detect asymptomatic carriers", by Shental et al.

Snakemake enabled pipeline for coverage estimation with GATK DepthOfCoverage

a bunch of useful functions and classes

Training Course on Galaxy for Bioinformatics tool developers

Reliable foundation library to access infrastructure elements for next generation sequencing data analysis and management