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MUSTA: end-to-end pipeline to detect, classify and interpret mutations in cancer

MUSTA: a modular pipeline to detect, classify and interpret mutations in cancer

SOLIDA is command-line solution that facilitate the reproducibility and portability of NGS pipelines. It can easily organize the deployment, the data management and the execution of a Snakemake based workflow.

miRNA analysis pipeline

solida-core documentation:

pipeline for Next-Generation Sequencing Whole Genome data analysis.

DiVA (DNA Variant Analysis) is a pipeline for Next-Generation Sequencing Exome data anlysis

Snakemake pipeline to map DNA datasets to a given reference genome using BWA MEM and Samtools.

mapping and variant calling following GATK Best Practices for Germline Variant Discovery.

Snakemake enabled pipeline for smallRNA-Seq identification

a pipeline for RNA-seq data analysis.

A pipeline for QC

DNA Reference Creator: this pipeline is aimed at downloading and building indexes and accessory files for reference genomes

A repository with test data for DNA analysis pipelines

Non Invasive Analysis of Somatic Mutations in Cancer

Container Docker application that facilitate the solida usage, via a friendly GUI